PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00301
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 420aa    MW: 48270.9 Da    PI: 7.8882
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00301genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.4e-0689112226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC ff + G+C+ G +CkF+H+
  AA33G00301  89 KSILCEFFKA-GQCQKGFKCKFSHD 112
                 6679**7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-587113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27287114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-687112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-589112IPR000571Zinc finger, CCCH-type
SMARTSM003563.4158195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793158196IPR000571Zinc finger, CCCH-type
PfamPF165431.5E-9216265IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MPPKQPKADL AKKQKQVEDK TFGLKNKNKS KNVQKYVQSL KQSVQPKPDA TKTAAKKKKD  60
EEKERERELN ELFKVAISQP KVPPGVDPKS ILCEFFKAGQ CQKGFKCKFS HDLNIQRKGE  120
KIDIYSDTRD QENTMEEWDQ ETLEKVVESK RKEYNQNKPT DIVCKYFLDA VEKKQYGFFW  180
ECPNGGKECH YRHALPPGYI LKSQMKALLE EESQKLPIEE EIENERAKLK TNTQMTTELF  240
MEWKRKKLAA RDAGLAASQA ERAKNDRMRY LLLFIIFFSS DQLVVSCFCR MQACLLMMLR  300
LVKNMKGKRN RKRVNKRVLL SPFLSLFTHT HAHTCGVNGN LEIWFQAKSK EAEAGTSKSG  360
GGDAKQSLKA VNEEAEADDD EDEDDDDDDD DLDMDELDEL EASLSKTSIK IREPSNEGSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065696e-45AC006569.5 Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence.
GenBankCP0026856e-45CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408943.11e-173hypothetical protein EUTSA_v10002021mg
SwissprotQ9SK741e-170C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLV4NUF51e-173V4NUF5_EUTSA; Uncharacterized protein
STRINGBra031114.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-162C3H family protein